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Python实现简单过滤文本段的方法

更新时间:2020-05-01 16:06:01 作者:startmvc
本文实例讲述了Python实现简单过滤文本段的方法。分享给大家供大家参考,具体如下:一、

本文实例讲述了Python实现简单过滤文本段的方法。分享给大家供大家参考,具体如下:

一、问题:

如下文本:


## Alignment 0: score=397.0 e_value=8.2e-18 N=9 scaffold1&scaffold106 minus
 0- 0: 10026549 10007782 2e-75
 0- 1: 10026550 10007781 8e-150
 0- 2: 10026552 10007780 1e-116
 0- 3: 10026555 10007778 0
 0- 4: 10026570 10007768 0
 0- 5: 10026579 10007758 4e-15
 0- 6: 10026581 10007738 2e-44
 0- 7: 10026587 10007734 9e-145
 0- 8: 10026591 10007732 2e-147
## Alignment 1: score=2304.0 e_value=1e-164 N=47 scaffold1&scaffold107 minus
 1- 0: 10026836 10007942 2e-84
 1- 1: 10026839 10007940 0
 1- 2: 10026840 10007938 0
 1- 3: 10026842 10007937 9e-82
 1- 4: 10026843 10007935 7e-79
 1- 5: 10026847 10007933 3e-119
 1- 6: 10026850 10007932 2e-87
 1- 7: 10026854 10007928 5e-22
 1- 8: 10026855 10007927 3e-101
 1- 9: 10026856 10007925 1e-106
 1- 10: 10026857 10007924 0
 1- 11: 10026858 10007922 9e-123
 1- 12: 10026859 10007921 1e-80
 1- 13: 10026860 10007920 8e-104
 1- 14: 10026862 10007918 4e-25
 1- 15: 10026863 10007917 0
 1- 16: 10026864 10007912 4e-40
 1- 17: 10026865 10007911 0
 1- 18: 10026866 10007910 7e-122
 1- 19: 10026867 10007908 2e-25
 1- 20: 10026868 10007907 0
 1- 21: 10026869 10007905 0
 1- 22: 10026870 10007904 3e-150
 1- 23: 10026871 10007903 5e-77
 1- 24: 10026874 10007901 0
 1- 25: 10026875 10007897 0
 1- 26: 10026876 10007896 0
 1- 27: 10026877 10007894 0
 1- 28: 10026880 10007893 3e-52
 1- 29: 10026881 10007892 0
 1- 30: 10026882 10007891 0
 1- 31: 10026883 10007890 0
 1- 32: 10026886 10007889 1e-50
 1- 33: 10026887 10007888 6e-157
 1- 34: 10026888 10007887 0
 1- 35: 10026889 10007884 0
 1- 36: 10026890 10007883 2e-18
 1- 37: 10026891 10007882 9e-64
 1- 38: 10026892 10007881 0
 1- 39: 10026895 10007880 0
 1- 40: 10026898 10007875 0
 1- 41: 10026900 10007874 0
 1- 42: 10026901 10007873 0
 1- 43: 10026902 10007871 2e-123
 1- 44: 10026903 10007870 0
 1- 45: 10026905 10007869 0
 1- 46: 10026909 10007868 1e-81
## Alignment 2: score=811.0 e_value=3.3e-43 N=17 scaffold1&scaffold111 minus
 2- 0: 10026595 10007449 6e-40
 2- 1: 10026599 10007448 4e-90
 2- 2: 10026600 10007447 0
 2- 3: 10026601 10007444 9e-55
 2- 4: 10026603 10007438 4e-78
 2- 5: 10026604 10007434 9e-122
 2- 6: 10026606 10007432 2e-162
 2- 7: 10026607 10007427 0
 2- 8: 10026608 10007426 0
 2- 9: 10026612 10007417 0
 2- 10: 10026613 10007415 8e-128
 2- 11: 10026614 10007414 3e-64
 2- 12: 10026615 10007409 0
 2- 13: 10026616 10007406 0
 2- 14: 10026617 10007403 1e-171
 2- 15: 10026618 10007402 0
 2- 16: 10026619 10007397 7e-18
........

要求:如果Alignment后面少于20行,把整个的去掉

二、实现方法:

python代码:


#!/usr/bin/python
sum = 0
sumdata = []
FD = open("/root/data.txt","r")
line = FD.readline()
while line:
 if line.find("Alignment") == 3:
 if sum >= 20:
 for i in sumdata:
 print i,
 sum=0
 sumdata=[line]
 else:
 sum = sum + 1
 sumdata.append(line)
 line=FD.readline()
 if len(line) == 0:
 if sum >= 20:
 for i in sumdata:
 print i,

附:

perl代码


#!/usr/bin/perl
open(FD,"/root/data.txt");
while (){
 if ($_ =~ /Alignment/){
 if($sum >= 20){
 print @sumdata;}
 $sum=0;
 @sumdata=($_);}
 else{
 $sum++;
 push(@sumdata,$_);}
}
print @sumdata if $sum >=20;
close(FD);

Python 过滤 文本段